STUDENT
ABSTRACTS
Astrophysics
The Large-Scale Structure of the Universe
Misa
Cowee
Redshift surveys performed in the last two decades have shown the existence
of large-scale galactic structures in the universe. To explain these
structures, cosmologists numerically model the evolution of structure formation.
Observational evidence gathered in the last five years indicates that our
universe is accelerating due to a repulsive force, the cosmological constant,
Λ. Previous numerical simulations have either not included Λ at all or
considered it only as a factor changing the scalelength of the universe and not
as a force which affects structure formation. This thesis presents a
mathematical model for a universe containing Λ and the numerical simulation
of 323 gravitationally interacting particles forming large-scale structure in a
universe dominated by the cosmological constant.
Continuing Science from the 1998 & 1999 Eclipses:
High Frequency Oscillations, General Structure, & Correlation with Space
Based Observations
Daniel B. Seaton
We follow up on two types of observations made at the total solar eclipses
in 1998 and 1999. The first observation seeks to generate a complete picture of
the solar corona, typically difficult because of the corona’s large
dynamic range, and coordinate it with space-based observations. We mosaic
several exposures of varying lengths to make a complete picture. Repairing
damage to the 1998 data resulting from a stuck bit, we are able to generate
images for 1998 and 1999. We absolutely calibrate the 1999 data and use the
1998 data to obtain a rough measurement of scattered light in the SOHO C1
coronagraph. The 1999 data is coordinated with SOHO C2 and EIT observations
taken during the eclipse to create a complete picture of the corona, from solar
surface to 6 solar-radii. The second observation, described by Russell (2000),
looks for intensity oscillations in bright coronal loops. These oscillations
are associated with magnetohydrodynamic waves that may be responsible for
coronal heating. We model the data in support of Russell’s measurements,
which suggested the presence of oscillations in the 1 Hz range. Our models
include a no-effect model to test noise induced by shifting in our image
sequence and a test of our sensitivity to signals non-uniform in phase and
spatial distribution. Sensitivity to oscillations down to 1% of total coronal
intensity is confirmed.
If Space Is Flat – The Topology of a Euclidean
Universe
Joey R. Shapiro
In this thesis, I discuss the possible shapes for a flat universe. Recent
observations suggest that the geometry of the universe may be flat. If this is
the case, then there are only eighteen distinct possible topologies for the
universe. Each of the eighteen Euclidean manifolds is classified and discussed
here. The final chapter offers the possibility of observing the shape of the
universe by analyzing the power spectrum of the spatial distribution of gamma
ray bursts from the BATSE catalogue.
Examining an Atmospheric Model: Discrepancies Observed
Between Arecibo Incoherent Scatter Radar Data and the International Reference
Ionosphere
Darik O. Vélez
I present results from recent topside ionospheric research at the Arecibo
Observatory in Puerto Rico. Aeronomers at the observatory have been collecting
topside incoherent scatter data for more than a decade. We gathered and
processed large portions of this data from throughout this period and began to
make comparisons with a widely used model of the Earth’s ionosphere: the
International Reference Ionosphere (IRI). Our results highlight significant
discrepancies between our observations and the IRI predictions. Many of these
differences may be aggravated by IRI’s overestimation of the electron
density that recent studies have demonstrated, but accounting for this we still
found areas where adjustments are needed. Particular areas of estimation errors
included the light ion densities and fractions in the topside region.
BIOLOGY
Can Regenerating Retinal Ganglion Cells Form Functional
Synapses on a Foreign Muscle Target?
Robert J. Adamo
Retinal ganglion cells (RGCs) are interneurons that convey visual
information from the retina to the brain. Upon injury in fish and amphibians,
these RGCs have the ability to regenerate to appropriate targets in the tectum,
allowing the return of function. Retinal ganglion cells have also been observed
to regenerate to a foreign target. In fact, when regenerating RGCs are
redirected to a muscle by means of a peripheral nerve bridge, they extend over
the muscle and form what appear to be synapses. In the present study, the
objective is to test whether these regenerating neurons can form functional
synapses to a foreign muscle target. RGCs were directed to the superior oblique
muscle of the eye using an axotomized segment of the posterior lateral line
nerve. The retina was stimulated approximately 80-100 days post-operatively
with a light stimulus that is known to activate central nervous system neurons.
EMG electrodes were placed on the muscle to monitor potential responses. No
responses have been observed with the flash stimulus. Additionally, upon direct
local stimulation of the retinal ganglion cells alone at the base of the optic
nerve, no response was recorded from the superior oblique muscle. These results
indicate that functional synapses may not be formed and challenges the
hypothesis that a glutamatergic neuron (RGC) can form a true functional synapse
with a normally cholinergically innervated muscle in the adult
vertebrate.
Study of the Breeding System and Population Structure of
the Arctic Disjunct Sagina nodosa
(Caryophyllaceae)
Margaret M. Cooley
Sagina nodosa is an arctic disjunct plant species that has a
threatened population on Isle Royale, MI. We monitored subpopulations to
determine survivorship patterns and studied the breeding system and distribution
of genetic variability to elucidate the population structure at different levels
in the population.
We used a long-term mapping strategy to monitor S. nodosa
life-history patterns, and found that plants have a high rate of survivorship
from year to year once they grow beyond the seedling stage. Most S.
nodosa plants grow vegetatively until they first flower, then they remain
reproductive. In the field, we observed individually marked flowers and
hand-pollinated flower stigmas to determine the stages and timing of flowering
and the rates of pollen tube growth for cross- and self-pollen. S.
nodosa is protandrous with little overlap between the pollen presentation
and stigma receptivity. There is a slight but distinct advantage for
cross-pollen in pollen tube development. Cross-pollinated flowers develop to a
pollination stage later than or equal to that of their self-pollinated partners
for all treatment times (2.5-45 minutes). Growth of more than one pollen tube
from each pollen grain and attachment to lower sections of the stigma may give
pollen grains an advantage in pollen tube competition.
We used the AFLP fingerprinting system to determine genetic relatedness
between S. nodosa individuals within subpopulations and between islands.
Despite initial difficulties, we found AFLPs to give highly reproducible results
with identifiable polymorphisms between different individuals, and continued
utilization of the system should provide useful information on the genetic
structure of the Isle Royale S. nodosa population.
The Participation of SFP1 at the G2/M DNA Damage
Checkpoint and the Initiation of a Synthetic Lethal Screen for SFP1 in
Saccharomyces cerevisiae
Elizabeth Lo
Cell cycle regulation in eukaryotes is an extremely complex process
involving myriad proteins that must function appropriately for the maintenance
of normal growth. In the budding yeast Saccharomyces cerevisiae, cell division
cycle (Cdc) proteins are among the key players that control cell growth. Certain
mutations of one of these critical genes, CDC14, result in temperature
sensitivity such that cells arrest at high temperatures and fail to exit from
mitosis; consequently, normal growth is compromised. However, a mutation of the
gene SFP1 has been found to suppress this temperature sensitivity and restore
normal growth of cdc14 mutants at the otherwise non-permissive temperature.
Furthermore, SFP1 has recently been implicated in the G2/M DNA damage checkpoint
and thus is a gene with several functions vital for proper growth. Xu &
Norris (1998) found that sfp1D mutants in the W303-1A background are more
sensitive to MMS and fail to arrest normally at the G2/M checkpoint after DNA
damage. Both observations were confirmed in these experiments for the sfp1D,
sfp1-1, and sfp1-2 mutants in the A364A background strain. It was apparent that
the sfp1 mutants differed from the wild-type SFP1 strain in sensitivity to MMS
and functionality of G2/M arrest; however, whether the responses of the mutants
differed significantly from each other remains unclear. Though SFP1 is a
nonessential gene, its established multiple roles within the cell cycle
compounded with the sickly phenotype of sfp1 mutants were the basis for
preparing a synthetic lethal screen. A color-sectoring assay exploiting the
adenine synthesis pathway could identify other genes whose mutants require SFP1
for survival. The appropriate SFP1 ADE3 plasmid and sfp1-1 ade2 ade3 strain
necessary for the screen were constructed. Once the plasmid from E. coli is
transformed into the S. cerevisiae strain, the synthetic lethal screen can be
performed.
Polychaete Development and a Polychaete Hunchback
Homologue
Duncan A. Meiklejohn
We have completed the characterization of the expression of a
hunchback homologue in a basal annelid. In Drosophila
melanogaster, the hunchback (hb) gene encodes a transcription
factor involved in the earliest stages of segmentation and anteroposterior
pattern formation. In the leech Helobdella triserialis, the hb
homologue Lzf2 (Leech Zinc Finger 2) is
expressed during development but shows no apparent AP function. Previous work
with the basal polychaete Capitella capitata had partially determined
expression patterns of a hb homologue, Cc-hb (Capitella capitata
hunchback) during early cleavage. We created a staging system for
Capitella development through metamorphosis, and determined that Cc-hb
protein expression patterns closely resemble LZF2 expression patterns during all
cleavage and organogenesis stages. We also attempted the first cloning of a
potential homologue to the Drosophila caudal (cad) gene in
annelids. Drosophila cad is a homeobox gene encoding a
transcription factor, and acts as a posterior segmental organizer. Attempts at
cloning cad from leech and Capitella via PCR with degenerate primers were
successful only in obtaining a clone of the leech Lox7 gene. This result
provides important information about the PCR technique and degenerate primer
design.
Vessel Hulls as a Dispersal Vector for Coastal Marine
Organisms
Caren T. Mintz
Vessels are a dispersal vector for transporting marine organisms. This
study examined the role of small coastal vessels in estuarine environments in
mediating such dispersal, the first such study undertaken on the Atlantic coast
of North America. A sample of 37 vessels based in Long Island Sound at
Stonington, CT, revealed a heterogeneous assemblage of nearly 50 species of
epibenthic (fouling) organisms, despite most of the vessels being coated with
toxic, ablative antifouling paints. These taxa utilized a diverse array of
microhabitats on a vessel's hull, such as the propeller and propeller shaft, the
keel bottom, the rudder, and a variety of smaller intakes, holes, and crevices,
including areas where paint had been worn away. Some of the taxa, such as the
bryozoans and ascidians, lack a planktonic dispersal stage. Therefore,
vessel-mediated dispersal may play a significant role in overall dispersal. It
also may influence gene flow for these organisms and many other taxa for which
natural geographic barriers (such as Cape Cod) inhibit planktonic dispersal.
These vessels may also be critical in the secondary, coast-wise dispersal of
non-native species after they have been initially introduced to the coast. An
additional smaller sample of foreign vessels that had arrived in New London, CT
(for OpSail 2000) after a short stay in the freshwater port of Philadelphia, PA,
suggests that passing a ship through freshwater is not a completely effective
means to reduce the transport of marine or estuarine species. Preliminary
experiments on the “port renewal hypothesis,” which proposes that
organisms transported across oligotrophic oceans may experience physiological
renewal once reexposed to nutrient-rich coastal environments, suggest that the
ascidian Botrylloides violaceus can survive the time required for an
oceanic crossing without food, and that once food is renewed, live a
considerable length of time thereafter, sufficient to potentially eventually
undergo reproduction. All of these studies call into question the naturalness of
the current distribution of many nearshore marine species around the world after
more than five centuries of coastal/oceanic exchange.
Aspects of Exit-From-Mitosis in S. cerevisiae:
Sequencing of Two cdc14ts Alleles and a Study of the Role of
SFP1
Liana J. Thompson
CDC14, a cell cycle gene that acts in exit-from-mitosis, encodes a
protein that is highly conserved between yeast and humans (Li et al. 2000).
Several mechanisms of regulation of CDC14 action have recently become
clear. The gene SFP1 appears to be one regulator of CDC14
(Paliulis et al. unpublished). sfp1 mutants suppress the
temperature-sensitivity of many, but not all, cdc14ts alleles (Paliulis
et al. unpublished). To better understand the reason why some alleles are
suppressed well and others are not suppressed at all, two alleles of
cdc14ts were sequenced. The results showed that cdc14-4 has two
amino acid changes in the 3’ end of the protein and that the 5’
regulatory regions of both cdc14-1 and cdc14-4 cause
temperature-sensitivity. Mutations in the 5’ regulatory sequence are more
than 613 base pairs away from the START codon for CDC14, but have not yet
been identified. To be able to put the results of the cdc14-4 mutation
in context, crosses were performed to characterize the suppression phenotype of
cdc14-4/sfp1 double mutants; suppression by sfp1 can be
categorized as good.
The possibility of a broader role for SFP1 in exit-from-mitosis was
also of interest and the interaction between sfp1 and cdc5,
another gene active in exit-from-mitosis, was investigated. Results indicated
that sfp1 does not cause suppression of the temperature-sensitive
phenotype; however some other factor within the cross appears to suppress the
temperature-sensitivity of cdc5. The identity of this other factor is
unknown.
Sphinganine Hydroxylase Activity in Corn: In
Vitro Characterization and In Vivo Stimulation by
Fumonisin
Brooke S. Wright
The predominant free sphingoid long-chain bases in corn shoots and other
plant tissues are sphinganine and 4-hydroxysphinganine. While sphinganine is the
product of the first two steps in the biosynthetic pathway, the origin of free
hydroxysphinganine has been questioned. We have demonstrated the direct
hydroxylation of sphinganine to form hydroxysphinganine in corn microsomes.
Sphinganine hydroxylase activity was assayed by monitoring the formation of
hydroxysphinganine using standard HPLC analyses of fluorescent OPA derivatives.
Hydroxylase activity required sphinganine and either NADPH (Km of 31 mM) or NADH
and was localized to the endoplasmic reticulum. Dihydroceramide appeared to
serve as a substrate for hydroxylation, but competition studies revealed that
the hydroxylation of dihydroceramide occurred by means of an enzyme other than
sphinganine hydroxylase. Following a 48-hr exposure to the mycotoxin fumonisin
B1, an inhibitor of ceramide synthesis, the levels of sphinganine and
hydroxysphinganine in corn shoot tips increased 3- to 7-fold and 8- to 10-fold,
respectively, compared to controls. The direct addition of fumonisin into the in
vitro assay did not affect hydroxylase activity; however, microsomes isolated
from corn shoots treated with 1 µM fumonisin for 24 or 48 hr exhibited 5-
to 7-fold and 8- to 11-fold increases in sphinganine hydroxylase activity,
respectively. Treatment with 1 mM sphinganine for 48 hours increased the free
sphinganine content in the corn tissue 3- to 4-fold compared to controls, but
did not affect sphinganine hydroxylase activity. These results indicate that
fumonisin upregulates the activity of sphinganine hydroxylase through an unknown
mechanism.
CHEMISTRY
Characterization of the NEG-1 Binding Protein Complex: A
Negative Regulator of the Interleukin (IL-4) Gene
Laura L.
Almstead
Interleukin-4 (IL-4) is a cytokine secreted by only TH2 and mast cells in
response to a number of extracellular signals. The regulation of IL-4 provides
a good system to study transcriptional regulation due to the tight control and
inducibility of this process. Mast cells can be stimulated to produce the
cytokine by the addition of ionomycin, a calcium ionophore, which bypasses the
normal extracellular signaling requirements. Previous studies have identified a
negative regulatory element, NEG-1 (-326 to -302), in the promoter region of the
IL-4 gene. A complex of one or more proteins has been found to specifically
bind this sequence. Interestingly, protein extracts from cells stimulated with
ionomycin show an increased level of binding to the NEG-1 sequence. In this
study, an investigation was performed to determine the molecular weight of the
binding protein(s) using both crosslinking and gel filtration chromatography
analysis. Mechanistic studies were performed using cycloheximide and
Actinomycin D to determine whether translation and/or transcription of new
protein could account for the increased binding observed with crude nuclear
extracts from stimulated cells. The results of these studies indicate that a
single protein of approximately 49 kDa binds specifically to NEG-1 in vitro. In
addition, it was concluded that new transcription and translation may account
for the increased binding observed with crude nuclear extracts isolated from
cells stimulated to produce IL-4.
Atmospheric R-OH Oscillators and Hydrofluorocarbons
Overtone Spectroscopy and Computational Methods
James R. Apgar
OH and CH oscillators are of great atmospheric importance; OH oscillators
in terms of the OH cycle, and CH oscillators in terms of their global warming
potential. The OH overtone transition energies and intensities for pernitric
acid, nitric acid, nitrous acid, sulfuric acid, sulfurous acid, hydrogen
peroxide, water, formic acid, methanol, ethanol(trans), ethanol(gauche),
hypochlorous acid and hypobromous acid were calculated. Calculations were
performed at the B3LYP/6-311++G(2d,2p) level of theory to obtain geometry
optimizations. The same level of theory was also used to calculate dipole
moment functions to the 5th order with ab initio, scaled ab initio
(using the scaling factor base of experimentally observed water ω and
ωx), and experimental anharmonic local mode parameters. The CH overtone
transition energies and intensities for 1,1,1,2,3,3,3-heptafluoropropane,
1,1,1,2,2,3,3-heptafluoropropane, pentafluoroethane, and trifluoromethane were
calculated in a similar manner except that the scaled ab initio scaling
factor was derived from experimentally observed trifluoromethane ω and
ωx. These calculations were compared to experimental values where possible
and seen to give results that were comparable to the present level of
experimental uncertainty.
The CH overtone spectrum of 1,1,1,2,3,3,3-heptafluoropropane was observed
in the range of 800 to 2500 nm. Integrated intensities and oscillator strengths
of this compound were measured for the first, second and third overtone. The
oscillator strengths of these transitions were 6 x 10-8, 5 x 10-9 and 7 x 10-10
for the first through third overtones respectively. These were similar to other
experimental values and also to the computationally predicted values of 7 x
10-8, 7 x 10-9, and 4 x 10-10.
Progress Toward the Complete Asymmetric Synthesis of
(+)-Pacifigorgiol
Katherine Belecki
(+)-Pacifigorgiol is a naturally occurring sesquiterpenoid that can be
isolated from the pacific soft coral Pacifigorgia adamsii. It has
demonstrated toxicity towards damselfish in bioassays, resulting in the
conjecture that the coral releases it as a chemical defense against herbivorous
fish. (+)-Pacifigorgiol is an intriguing molecule from a structural standpoint.
It contains five densely packed contiguous stereogenic centers within a
relatively small fused bicyclic framework. These features make it an enticing
challenge for synthetic chemists.
In this work, we propose a novel asymmetric route to either antipode of
pacifigorgiol. Our synthetic route employs a transition metal–catalyst to
achieve the bicyclic skeleton of the target molecule from an acyclic precursor
in one step via an intramolecular [4 + 2] cycloaddition. This underutilized
class of reactions can serve as a synthetic alternative to the thermal
Diels-Alder cycloaddition, which can have some restrictive electronic
requirements. Transition metal–catalysis proceeds through a multi-step
mechanistic pathway, often avoiding the restrictive HOMO-LUMO gap requirements
of the Diels-Alder cycloaddition while still maintaining
diastereoselectivity.
Most of the reactions leading up to the key cycloaddition step in the
racemic analog of our synthesis have been successful. Current work focuses on
optimization of the key cycloaddition step. A byproduct is generated
simultaneously and has thus far proven to be inseparable, preventing
characterization of the cycloaddition products. This work describes our
progress along the synthetic pathway towards (+)-pacifigorgiol.
Profiling of Bacillus subtilis Gene Expression
Following DNA Damage
Karen A. Chachu
Bacillus subtilis responds to DNA damage by inducing the SOS DNA
repair genes, a set of coordinately controlled genes. Gene induction is
controlled by LexA and RecA proteins, which are themselves products of SOS
genes. LexA binds to a consensus sequence within the promoter region of every
SOS gene. A BLAST search of the Bacillus subtilis genome sequence
database using the consensus sequence identified a number of potential novel SOS
genes. Gel mobility shift analysis confirmed that LexA binds to these genes.
This work reports that gene expression profiling confirmed that all 18 putative
SOS genes are indeed novel SOS genes and are induced in response to DNA damage
by mitomycin C and ultraviolet light. Additionally, the expression levels of
several other DNA repair genes were determined and parts of the overall genomic
response during the DNA damage response to both types of DNA damage were
analyzed.
Noncanonical Structure and Recognition Elements in
Mitochondrial Alanine tRNA
Daniel R. Clayburgh
The biochemistry of the alanine aminoacylation reaction is well understood
in E. coli, and the model developed in this organism appears to hold for
prokaryotes and the cytoplasmic and chloroplast alanine systems in eukaryotes.
The mitochondrial tRNA, however, display substantial deviation from the
aminoacylation recognition pattern established in E. coli. Two
mitochondrial tRNAs with fundamentally different deviations from the E.
coli alanine model are investigated. The first, from the roundworm C.
elegans, contains the basic alanine identity elements in the tRNA acceptor
stem, but the tRNA lacks a TΨC loop, a major structural element that may
have an important role in stabilizing the aminoacylation reaction. Chimeric
tRNAs which exchanged parts of the canonical E. coli alanine tRNA for
pieces of the C. elegans mtRNAala were used to assay for the effect of
the TΨC loop upon aminoacylation. None of these tRNA chimeras was
aminoacylated (in contrast to E. coli wild type tRNA, which was readily
aminoacylated), indicating that the loss of the TΨC loop had a profound
effect upon the tRNA. This effect could be due to incorrect base pairing or a
noncanonical tertiary structure; however, further experiments could not resolve
this difference, and the lack of chimeric charging remains unexplained. The
second system investigated is from human mitochondrial tRNAala. In this tRNA,
the canonical cloverleaf tRNA structure is intact, but the alanine tRNA
recognition elements known from E. coli are altered substantially. In
order to investigate this system, the human mitochondrial AlaRS (HMA) was cloned
from a cDNA library. The first cloning attempt did not generate active enzyme,
which may have been due to the presence of a mitochondrial targeting sequence on
the N-terminus of the protein. A second cloning attempt sought to remove this
targeting sequence from the protein by selective PCR. SDS-PAGE analysis
suggests that the HMA clones without the mitochondrial targeting sequence were
well expressed in the E. coli expression system.
Spatial and Temporal Variation in the Liability of
Dissolved Organic Carbon in Coastal Groundwater
Julianna B.
Connolly
Incubations of groundwater collected from coastal marshes in Warwick and
Kingston, RI, USA were carried out to determine the lability of dissolved
organic carbon to the groundwater bacterial community. Groundwater was collected
on six days between August and December 2000 from wells that had been installed
at the two sites. The groundwater samples varied in distance from the
water’s edge, depth below the ground’s surface, salinity,
temperature, collection date, and initial concentrations of both dissolved
organic carbon (DOC) and dissolved inorganic carbon (DIC) that they contained.
The incubations were run at approximately 15 ˚C for different lengths of
time ranging between 7 days and 37 days. Samples from different time points
during the extent of the incubation were analyzed for DOC and DIC. Prior to
incubation, some groundwater samples were filtered through 0.2 μm filters
and some were not. The unfiltered groundwater tended to show a net increase in
DOC with time, while the filtered groundwater either showed a net decrease in
DOC or no significant change at all. Lability was determined by calculating the
net loss of DOC as a result of the incubation. The small losses of DOC during
the incubation suggested that the DOC in the filtered groundwater was not very
active in bacterial respiration or denitrification processes. This finding
contradicted ambient measurements, which suggested that DOC use in the
groundwater was dynamic and affected denitrification capacity. That the
unfiltered groundwater showed a net increase in DOC suggested that particulate
organic carbon (POC) might be an important source of groundwater organic carbon.
Future research will investigate the lability of DOC in the soil matrix where
DOC sources and bacterial populations are more similar to ambient conditions.
Kava: The Biology and Chemistry of a Pacific
Elixir
Mabel Djang
Kava is an herbal remedy that originated as a ceremonial beverage in many
Pacific Ocean societies. Although it exhibits a variety of physiological
effects, such as the ability to relax muscle and to induce sleep, it is most
touted for its anxiety-relieving properties and is increasingly being perceived
as a viable alternative to synthetic anxiolytics like Valium. Of special
biological interest is the fact that kava appears to relieve anxiety in a
pathway that differs from the mechanism of action of benzodiazepines like
Valium.
Although the potency of crude kava root extract greatly exceeds that of its
individual component active principles – the kavalactones – certain
molecules seem to specialize in certain biological abilities. For example,
dihydromethysticin and dihydrokavain demonstrate analgesic properties at twice
the potency of aspirin while kavain by itself seems to demonstrate a limited
ability to relieve anxiety. Investigations into these pathways may yield
important biological insights with regard to pain and anxiety
pathways.
Crude kava extract itself is easily obtainable; however, large quantities
of pure kavalactones enantiomers are not. Several syntheses of the kavalactones
do exist, but only two are asymmetric. Unfortunately, those two syntheses
demonstrate significant limitations. Currently, the only method by which
enantiopure samples of kavalactones can be obtained is via preparative HPLC, a
most time-consuming process.
Development of an asymmetric synthesis that is both general and practical
is possible given the structural similarities between the fifteen kavalactones
– each kavalactone demonstrates one stereogenic center with the same
absolute configuration as all the others, a lactone with a methyl enol ether
moity, and a side chain. Access to enantiomerically pure samples of
kavalactones and their unnatural analogs for study is an endeavor of increasing
importance given the rising popularity of alternative medicine and the need for
more information specifically concerning this compound.
This work gives an overview of what is known about the biology of kava. In
addition, a five-step asymmetric synthesis of the kavalactones is proposed.
Progress up until the synthesis of the β-keto ester, the molecule that
contains all of the atoms needed for (+)-kavain, is described, as well as the
roadblocks that presented themselves during the course of our attempts at
lactonization.
Determining the Absolute Stereochemistry of the
Saccharide Moieties of Toxicariosides
A, B, and C
Ryan B.
Hayman
Toxicariosides A, B, and C were isolated from the sap of the tree
Antiaris toxicaria in the Richardson lab, at Williams College. The
Richardson group then determined that the absolute stereochemistry of the
aglycone moieties in these cardiac glycosides is identical to that in
α-antiarin, a cardenolide previously isolated and characterized from the
same natural source. The saccharides were determined to be: A:
6-deoxy-2-O-methylgalactose; B: 6-deoxy-2-O-methylglucose; C:
6-deoxy-2-O-methylgulose, however, the absolute configuration of these sugars
could not be established. Studies were begun to develop a method to determine
the absolute stereochemistry of the sugars of cardiac glycosides, whereby they
were cleaved from the aglycone moiety, transformed with a chiral, optically
active molecule, and the resulting diastereomers were analyzed by gas
chromatography.
Upon cleavage from the aglycone, saccharides were butylated with optically
pure 2-butanol and permethylated. In this thesis, final refinement of the
analytical method was accomplished, and involved a significant reduction in
substrate scale in order to simulate the synthetic transformation of the
toxicariosides. Transetherification with S-2-butanol accomplished the cleavage,
producing butylated saccharides that were subsequently permethylated. The
method was developed on a very small scale and refined to produce unambiguous
results on several cardiac glycosides before application to toxicariosides A, B,
and C. In this study, the absolute stereochemistry of the saccharide moiety of
toxicarioside A was determined to be D. The absolute stereochemistry of the
saccharide carried by toxicarioside B was tentatively determined to be L, while
the sugar of toxicarioside C was tentatively identified as D.
Progress Toward the Synthesis of Novel Models for the
Active Site of Zinc(II) Enzymes
Elizabeth E. Roller
In recent years, the number of enzymes identified as zinc enzymes has
increased dramatically. The zinc(II) ion in these enzymes has been proposed to
serve a wide variety of catalytic functions, yet the mechanism of catalysis and
role of the metal in many of these enzymes is not completely resolved. For this
reason, small molecule synthetic models of an enzyme’s active site are
useful in exploring the role of zinc and the ligands coordinated to
it.
Progress has been made toward the synthesis of models that mimic the unique
one histidine and two cysteine [NSS] coordination environment of Liver Alcohol
Dehydrogenase and Methionine Synthase. Attempts at preparing an [NSS] ligand
utilizing substituted oxazoles is described. The synthesis of one [NSS] ligand,
N,N-bis(ethanethiol α,α dimethyl)2-methylthioethylamine, is described.
This ligand reacts with nickel(II) and zinc(II) compounds to give complexes
formulated as M[NSS]. Molecular orbital calculations have begun to explore
whether the extensive methyl substitution in the ligand backbone favors the
formation of monomeric products.
Impact of a Thin Sulfuric Acid Layer on Sulfur Dioxide
Adsorption to Soot
Jay G. Slowik
As jet aircraft fly across the sky, they leave behind them trails of small
H2SO4-coated soot particles that serve as condensation
nuclei for water droplets. These condensation trails, visible from the ground,
have been observed to contain a greater percentage of sulfur in the form of
H2SO4 than predicted by current models and engine ground
tests. As a result, the H2SO4-coated soot particles
themselves have been proposed to take part in a heterogeneous chemical reaction
involved in converting SO2 from the aircraft’s emissions into
H2SO4. We have spent the year studying the effect of a
monolayer-scale H2SO4 coating on the ability of
SO2 to adsorb to soot formed by the combustion of n-hexane.
Our experiments take place on a thin film of soot under simulated
atmospheric conditions. To make sub-monolayer and thicker layers of
H2SO4 on the soot, we first deposit SO3, then
excess H2O, and then heat to -80°C. Bulk and sub-bulk
SO3 adsorption has been observed. We have discovered that at
sub-bulk levels SO3 penetrates deeply into the soot. The most
efficient method of constructing H2SO4 has been by using
SO3 that has bound to the internal pores of individual soot spheres.
Using this method, we have constructed H2SO4 layers of 1.4
to 2.7 monolayers (ML) thick (+50%). By using SO3 bound to
the surface of the soot particles, we have made layers as thin as 0.006
ML.
H2SO4 in monolayer-scale quantities has proven to
significantly decrease SO2 adsorption to n-hexane soot. Layers
thicker than 1.4 ML have reduced SO2 adsorption by a factor of 6,
while even layers of around 0.6 ML decrease adsorption by a factor of 3.
H2SO4 layers of 0.02 ML or lower have had no observable
effect. This means that a reaction involving SO2 bound to the soot
may be self-limiting in nature.
Building One-Dimensional Materials: Progress towards the
Synthesis of 4,4’- and 5,5’-Disubstituted 2,2’-Bipyridine
Mesogenic Ligands
Mark D. Walrod
Because of their interesting physical properties and potential applications
in commercial devices such as microprocessors, the synthesis and study of
one-dimensional conducting materials has come into the fore of materials
science. We have met the challenge with significant progress towards the
synthesis of novel liquid crystalline bipyridine ligands capable of complexing
to group VIII metals in order to form potentially conductive, one-dimensional
metal chain systems. This paper focuses on the steps involved in the synthesis
of 4,4’- and 5,5’- diamino 2,2’-bipyridines, both with and
without 3,3’ methyl groups, condensed with two trialkoxy benzoic acids
with variable length aliphatic substituents (C6, C8,
C10, C12, C14, C16). The
characterization of an analogue of our 5,5’ target ligand indicates the
presence of a mesogenic phase.
COMPUTER
SCIENCE
Caching, The Java Virtual Machine, and Why They
Don’t Like Each Other
M. Arthur Munson
With the disparity between processor speeds and memory speeds growing,
caches have become crucial to the performance of modern computers.
Simultaneously, developers are trying to use the Java platform for more than
spinning pretty pictures in web pages. Due to the platform’s
architecture, a JVM implemented in software is unable to make use of the
instruction cache on the underlying machine. We will first look at the
distribution of memory accesses made by an executing Java program, and then
compare the impact of caching for a Java program versus a traditional natively
compiled program. We will end by considering alternative cache configurations,
including a dedicated stack cache, and by discussing what work remains to be
done.
Encoding LOOM Objects in a Typed Intermediate
Language
Aaron Berman
We examine two different methods of translating objects from the
object-oriented Language LOOM into a typed intermediate language. Such
translations have recently been thought to be effective ways to compile source
languages for various reasons. We examine why, and then describe in detail two
different object encoding for LOOM. We then compare the two both in theory and
in practical application.
Languages Don’t Have Shrinks; How To Increase
Java’s Expressiveness So It Plays Nice With Programmers
J. Nate
Foster
The Java programming language incorporates several concepts from the
academic research community. An intermediate compilation language (which makes
platform independence possible), and automatic garbage collection have both
contributed to Java's recent success. However, Java’s type system lacks
support for important features found in many modern programming languages.
These features include parametric polymorphism, and (less commonly) ThisType.
Since Java lacks a robust type system, programmers are often forced to abandon
static type safety and resort to risky run-time checks.
Several projects in the recent past have extended Java with more expressive
type systems while still targeting the standard Java platform. In this project,
we extend on one such language, Rupiah, by improving its implementation of
parametric polymorphism and adding a new kind of constructor, ThisClass –
a robust mechanism for virtual object creation. We begin this talk by providing
some motivation for including these new constructs in the language. Then we
describe their implementation and advantages when compared with programs written
standard Java. Finally, we suggest several ideas for implementing the language
more elegantly and efficiently in the future.
GEOSCIENCES
Applied Hydrogeology: Protecting the Groundwater
Resources of the Arlington Quadrangle, VT
Alan P. Baldivieso
’01
An evaluation of the hydrogeologic resources of the Arlington 7.5 minute
quadrangle, VT, was carried out for the Vermont Geological Survey under a
contract with the Vermont Geology Division. The extent of carbonate bedrock and
glacial overburden surface aquifers in the valley portion of the quadrangle was
delineated. Maps of overburden thickness, piezometric surface, and aquifer
recharge potential were generated, as were four stratigraphic cross sections
across the quadrangle.
One thousand ninety-three water well drill logs were initially examined
from computerized records obtained from the Vermont Survey. Of these, 328 wells
could be confidently correlated to existing homes and placed on a map using
ArcView. The quadrangle’s primary groundwater source is a large confined
carbonate bedrock aquifer. The aquifer underlies all inhabited portions of the
quadrangle; its extent is revealed by subsurface data from 213 wells. A
piezometric surface map for this aquifer was constructed and indicates that
areas surrounding topographic highs where there are gaps or thinning in the
confining layer might have an enhanced aquifer recharge potential. Several
smaller unconfined surface overburden aquifers exist in kamic fields throughout
the Vermont Valley. The smaller aquifers currently play a secondary role as
groundwater resources for the quadrangle, but could potentially become more
important as water demands increase.
An aquifer recharge potential map highlights hydrogeologically
“sensitive” areas where surface water most easily enters aquifers.
A qualitative assessment of the map accompanies the report to encourage
protection of groundwater resources in the quadrangle.
I present a cohesive summary of the hydrogeology of the quadrangle intended
to be accessible to non-geologists and useful in land management decisions. It
is hoped that the report will promote environmentally informed decisions on land
use in the quadrangle.
Understanding Glacier Sliding from Subglacially Deposited
Silt Skins
Carissa L. Carter ’01
Glacial advances and retreats, prominent factors in global climate and sea
level change, are controlled by climate and a combination of processes including
ice deformation, basal sliding, and subglacial hydraulic systems. Evidence of
the effects of these processes is preserved in the landforms and deposits left
behind. Examining deposits recently uncovered by retreating glaciers is one
method of studying subglacial processes and glacier sliding. Features of
subglacial deposits, including their distribution, morphology, and chemistry,
provide specific clues about the interaction of ice, the bedrock it flows over,
and subglacial water. Morphology of subglacial deposits is a key to
understanding the larger aspects of glacier systems, and how they, in turn, have
affected global climate throughout Earth history.
In the past two decades, the retreating Mendenhall Glacier in Juneau,
Alaska has exposed a bedrock ridge spotted with patchy coatings of
calcite-cemented clay to sand-sized lithic grains. These coatings, referred to
in this study as 'silt skins', range from 0.5 to 20 mm in thickness and display
two distinct morphologies: striated and corrugated. Striated silt skins are
thin, located mainly on stoss slopes, and preserve local striation direction.
Thicker, corrugated skins form on lee slopes and consist of parallel microridges
elongated in the local downslope direction.
Skins are stratified into a massive, basal, calcite-rich layer, and a
micro-laminated upper layer of calcite cemented clay- to sand-sized lithic
grains. Microlaminae in the upper layer display complex internal structures:
wavy microlaminae, cross-bedding, convolute forms and truncations, and pockets
of larger grains.
Deposition of silt skins at the Mendenhall Glacier depended on macro-scale
processes in the glacier system, outcrop-scale features of the rock ridge, and
micro-scale interactions of the ice, bedrock, and thin films of water in the
regelation layer. Calcite in silt skins probably originated from the weathering
of feldspar, and became concentrated in basal ice through glaciohydraulic
supercooling. Isotopic values of d 018 and d C13 with respect to the PD
Belemnite standard indicate that skins were deposited in subglacial waters with
varying isotopic concentrations, and that the carbon in silt skins is derived
from inorganic sources.
Regelation processes are probably responsible for the precipitation of the
silt skin basal layer. Subsequently, at a critical basal layer thickness,
deposition of the upper layer becomes the dominant process. Controls on the
deposition of the micro-laminae in the upper layer are: 1. Angle of the rock
face; 2. Amount of ice-rock separation; 3. Flow energy; 4. Amount and grain size
of transported sediment.
Corrugations are depositional features enhanced by erosional processes;
wavelengths generally range from 1 to 10 mm. They formed as sediment-rich water
dripped or oozed down lee slope rock faces. Erosional and deformational effects
on silt skins may have caused surficial chemical compositional differences of
Ca/Si in skins and the oversteepening of internal microlaminae. Secondary
deposition and erosion on wavy laminae may enhance the appearance of truncations
in thin section, in addition to controlling crest morphology and wavelength.
Silt skins probably formed when a subglacial cavity system was active on the
rock ridge, probably within the last 60 years. Specific features of the cavity
system, whether it was autonomous or interconnected, and features of local
valleys that preserve an abundance of silt skins, are clues as to how
micro-scale processes interact with larger-scale subglacial systems. Silt skins
are evidence that the subglacial environment is complex, dynamic, and responsive
to changes experienced by the whole of the glacier system.
The Itremo Group of Central Madagascar: Direct Dating of
a Major Metamorphic Event and Evidence for a New Neoproterozoic Metasedimentary
Sequence
Stephen B. DeOreo ’01
Samples for U-Pb zircon SHRIMP geochronology were collected from the
western extent of the Itremo Group Proterozoic metasediments in central
Madagascar during August 2000. Zircons with rounded detrital cores with
truncation of internal zoning are interpreted to represent transported grains
and are present in metasediments. Euhedral, zoned cores with no evidence of
mechanical weathering are interpreted to represent non-transported zircon grains
from igneous and meta-igneous rocks. Metamorphic zircon overgrowths occurred on
grains from all samples analyzed. When possible, core-rim pairs were analyzed
on both detrital and igneous cores. The Itremo Group was previously determined
to have been deposited between 1722±40 Ma (youngest detrital zircon
[Chokel, 2000 #39]) and 791 Ma (age of oldest intrusion in Itremo Group [Handke,
1999 #6]). This study does not improve the resolution of this depositional
interval. However, sample MAD 00-36 may represent basement to the Itremo Group,
which has not previously been found or dated.
Concordant detrital core ages from one group of metasediments in this study
cluster at 980 Ma, 850 Ma, ~800-750 Ma, and ~650-600 Ma. Therefore these
sediments are tentatively interpreted to be a separate Neoproterozoic-derived
sedimentary sequence, here named the Molo River Sequence. Comparison of
detrital core ages from this study with a database of crystalline basement rock
ages from various Rodinia/Gondwana cratons (provenance analysis) suggests that
the Itremo Group is derived from a combination of south Indian, Sri Lankan and
Malagasy source rocks, and that East Antarctica can be excluded as a source
area. Provenance analysis also suggests that the Molo River Sequence is derived
from East African crystalline basement rock.
Both the Itremo Group and the Molo River Sequence have metamorphic
overgrowths dated to ~550 Ma. This tectonothermal event is the signature of the
final amalgamation of Gondwana. Three-dimensional analysis of the Lazarivo SPOT
scene suggests that this modeling technique will be useful in the analysis of
the complex structural geology associated with this continental collision.
However, Arcview comparison of the contour lines derived from the 100 km pixel
DEM and actual topographic map contours shows that a higher resolution DEM will
be required in order to do detailed structural analysis.
Deflection of Glacier Flow by a Bedrock
Ridge
Marlene F. Duffy ’01
In the last ten to thirty years, retreat at the Mendenhall Glacier has
revealed a bedrock ridge with significant evidence for deflection of flow on
both the macro and outcrop scale as the glacier encountered the stoss and lee
feature. The schist ridge or “rib” at the Mendenhall abuts the
valley wall at an 82-degree angle, thus presenting an obstacle to glacier flow
for much of the valley that deflected flow. The stoss face of this rib consists
of a series of stoss and lee features stepping up to the ridge crest. The
relatively unweathered surface of the large-scale stoss face affords an
excellent opportunity to study the effects of the bedrock obstacle on flow
patterns, both on an outcrop and a macro scale. These striations reveal a
pattern of deflected and undeflected striations on both scales.
This project analyzes the macro scale effects of the ridge with rose
diagrams of both striations and jointing. On the outcrop scale, different
aspects of the bedrock topography are used to predict the magnitude of the
deflection effect locally. This is done using both simple and multiple
regression and different measures of the magnitude of deflection of glacier
flow.
Jointing in the City of Rocks Dome, Almo,
Idaho
Anne G. Hereford ’01
The City of Rocks dome, near Almo, Idaho, is part of a chain of metamorphic
core complexes extending from southern Canada to northern Mexico. The 29 Ma
Almo pluton intruded ~2.5 Ga granitoids and unconformably overlying
metasediments. Exposures of the Almo pluton in the City of Rocks National
Reserve and Castle Rocks consist of large outcrops in the forms of fins,
bornhardts and tors. The rocks of the City of Rocks dome are extensively
jointed. Joints can be found in all orientations, but there are two sets of
steeply-dipping joints that are pervasive through the unit and are more
prominent than random distribution would allow – one striking WNW-ESE and
the other striking N-S. These joint sets are attributable to Miocene extension
and doming events. Analysis using Geographic Information Systems (GIS) supports
the theory that shallowly-dipping joints are the result of unloading and also
demonstrates a relationship between the N-S joint set and the overall slope
direction of the basin.
Sediment Budgets and Stream Terraces: Reconstructing the
Effects of Historic Land-Use Changes on Sediment Transport in the Birch Brook
Catchment, Massachusetts
William B. Ouimet ’01
Stream terraces along channels of the Birch Brook catchment probably record
response to increased sediment load resulting from land clearing throughout the
19th century. There are three main terrace levels along Birch Brook that I
differentiate on the basis of height above the channel: low (<1.1 m above
channel), intermediate (1.1 m – 2.0 m above channel), and high (>2.0 m
above channel). The low, youngest terraces are the focus of this study.
Sediment budgets for the South Branch of Birch Brook catchment, NW
Massachusetts, indicate that annual bedload discharge (~2.0 tons km-2 yr-1) is a
function of the number of peak events above bankfull (0.34 m3 s-1) and sediment
supply. Sediment availability in the South Branch, a small, forested mountain
stream draining 1.25 km2, is limited due to low erosion rates on hill slopes.
Significant sediment storage occurs behind organic debris dams, and in pools
associated with bedrock reaches. When annual storm events are < 80 to 90
percent of bankfull, relatively little sediment is available for transport.
Because sediment storage along the channel is substantial, the relationship
between discharge and sediment delivery shifts after high discharge events, such
as the 15-year flood, which flushes out significant debris dams and transports
sediment downstream.
The bedrock channel of the South Branch is typical of upper stream reaches
within Birch Brook; lower reaches are alluvial. Bedrock reaches are sediment
starved, with steep stream gradients ~0.08, narrow channel widths of ~2 m, low
sediment supply, and high sediment transport capacity, though the lack of
readily available sediment limits the amount of sediment transported. Alluvial
reaches are 2 m wider, have stream gradients much lower than 0.06, and a higher
sediment supply than upper bedrock reaches. The sediment available in these
reaches is stored in low terraces, gravel bars, and in the channel bed. Mean
annual sediment load for Birch Brook is between 2.0 and 4.0 tons km-2
yr-1.
Deforestation, grazing and cultivation within the Birch Brook catchment
throughout the 19th century produced increased erosion on hill slopes and stream
aggradation. The total volume of sediment associated with the formation and
incision of low terraces is ~9,000 tons. Based on STELLATM models for
sedimentation within Birch Brook during the 19th century, hill slope erosion
probably reached values of 40 - 70 tons km-2 yr-1 during disturbance, building
low fill terraces despite increases in sediment yield. Tree core ages show that
terraces stabilized between 60-80 years before present, after the terraces had
sufficiently incised to leave terraces isolated from the effects of annual flood
discharges.
MATHEMATICS
Calculus: Its History, Teaching, and
Pedagogy
Camille S. Burnett
There are three components to this study – the first, a historical
and analytical survey of the calculus; the second, a comparison of teaching
methods and approaches across two cultures, the United States and Jamaica; the
third, a section on course module development. In the history of the calculus,
we examine how calculus developed, the motivation of the theory and the major
problems encountered. We present an overview of contributions by early
mathematicians, a more in-depth look at the work of Newton and Leibniz, and
discussed how calculus was made rigorous in the 1800s.
Rank One Mixing and Dynamical Sequences
Darren
Creutz
Rank one transformations are a class of ergodic transformations constructed
using a cutting and stacking method. We show that a class of rank one
transformations characterized by adding spacer levels that have restricted
growth but also tending toward a uniform type of distribution are indeed mixing
transformations. All previously known mixing rank one transformations,
including staircase transformations satisfying the restricted growth condition,
fall into our class.
Four-Manifolds and Related Topological
Investigations
Richard Haynes
In this thesis, I investigate high dimensional manifolds through the lens
of four-dimensional topology. In this vein, I use invariants of
four-dimensional spaces to specify related properties of larger ambient spaces.
This relationship provides restrictions on the possible structures of these
larger spaces.
Power Weak Mixing and Recurrence in Infinite
Measure
Abhaya N. Menon
In this thesis, we explore the idea of Power Weak Mixing and demonstrate
the existence of a family of transformations exhibiting this property. We then
investigate the recurrence properties of this family of
transformations.
An Improvement on Legendre’s Theorem from
Diophantine Approximation
Rungporn Roengpitya
In this thesis, we explore two questions from Diophantine analysis. First,
we improve Legendre’s Theorem by finding the best possible constants for
ϕ, the golden ratio, and the generalized golden ratio ϕ2
and ϕ3. Then, we explore the nature of the function
;x;where x is an
irrational number in one and two dimensions.
PHYSICS
Color Tuning through Mechanical Stretching in
Polyacetylene
Benjamin K. Cooper
Polyacetylene is the simplest member of the family of conjugated polyenes,
molecules possessing a carbon backbone with alternating single and double bonds.
This group includes a number of molecules with interesting optical properties;
by studying polyacetylene, we hope to gain a better understanding of conjugated
polyenes as a whole. We theoretically examine the effects of applying a
mechanical stretch to polyacetylene chains on the photoexcitation gap of these
chains. Calculations are performed using two different models: the
Su-Schrieffer-Heeger (SSH) model for polyacetylene, and an extended Hubbard
model that includes important electron correlations omitted by the SSH model.
Stretching is shown to have a color tuning effect on polyacetylene chains. The
details of this effect are explored in a variety of contexts - with correlated
vs. uncorrelated models, in even vs. odd length chains, and finally in undoped
vs. doped chains.
Entanglement Sharing: Three Qutrits and
More
Kenneth A. Dennison
After reviewing the background needed to discuss the problem, we explore
entanglement sharing among three qutrits (spin-1 particles), and among
objects with greater spin. We find a lower bound for “optimal”
entanglement sharing among three qutrits, and speculate about entanglement
sharing among objects with N orthogonal states, investigating N =
4 and N = 7 in particular. Our work is an attempt to extend the results
of Coffman, Kundu, and Wootters [3], who extensively studied entanglement
sharing among three qubits (spin-1/2 particles).
“Measuring the Stark Shift in the
6P1/2 → 7S1/2 378 nm Transition in
Atomic Thallium”
Paul D. Friedberg
This thesis describes an ongoing experiment, the goal of which is to
measure the Stark shift in the 6P1/2 → 7S1/2
transition in atomic thallium. An accurate Stark shift measurement provides a
sensitive test of wavefunction calculations essential for the interpretation of
atomic parity non-conservation experiments. A description of the equipment and
its operation, including a frequency-doubled and stabilized laser, an atomic
beam apparatus, and a precisely calibrated high voltage electric field system,
will be given. Our preliminary measurement of the Stark shift constant of
proportionality of: 119(4) kHz/(kV/cm)2 is in agreement with previously measured
values. Once we resolve systematic experimental errors, which are discussed
here at length, we expect to complete a measurement with uncertainty below the
$\pm 1\%$ level.
Quantifying Entanglement
Duane M. Lee
There exists for the quantum mechanical phenomenon of entanglement a good
mathematical quantification called concurrence. Due to the growing investment
in the properties of entangled systems, one would hope to find a physically
interpretable measure of entanglement that one could access more directly in the
lab. In this thesis we investigate various measures of
“outcome-entropy” - these measures express one’s degree of
ignorance about the outcome of a measurement for two-qubit systems with varying
values of the concurrence. (A qubit is any binary quantum object). By
comparing the concurrence of a system to its outcome-entropy we found two
particular measures, the average Bell outcome-entropy and the minimum linear
outcome-entropy, which exhibited a notable correlation. The latter also
displayed a lower bound on the amount of concurrence possible for any two-qubit
system with a certain outcome-entropy. We present these findings in the
following pages and conclude by discussing potentially better correlations that
might be obtained by considering other measures of outcome-entropy related to
the ones studied in the thesis.
The Large-Scale Structure of the Universe
Misa
Cowee
Redshift surveys performed in the last two decades have shown the existence
of large-scale galactic structures in the universe. To explain these
structures, cosmologists numerically model the evolution of structure formation.
Observational evidence gathered in the last five years indicates that our
universe is accelerating due to a repulsive force, the cosmological constant,
Λ. Previous numerical simulations have either not included Λ at all or
considered it only as a factor changing the scalelength of the universe and not
as a force which affects structure formation. This thesis presents a
mathematical model for a universe containing Λ and the numerical simulation
of 323 gravitationally interacting particles forming large-scale structure in a
universe dominated by the cosmological constant.
Continuing Science from the 1998 & 1999 Eclipses:
High Frequency Oscillations, General Structure, & Correlation with Space
Based Observations
Daniel B. Seaton
We follow up on two types of observations made at the total solar eclipses
in 1998 and 1999. The first observation seeks to generate a complete picture of
the solar corona, typically difficult because of the corona’s large
dynamic range, and coordinate it with space-based observations. We mosaic
several exposures of varying lengths to make a complete picture. Repairing
damage to the 1998 data resulting from a stuck bit, we are able to generate
images for 1998 and 1999. We absolutely calibrate the 1999 data and use the
1998 data to obtain a rough measurement of scattered light in the SOHO C1
coronagraph. The 1999 data is coordinated with SOHO C2 and EIT observations
taken during the eclipse to create a complete picture of the corona, from solar
surface to 6 solar-radii. The second observation described by Russell (2000),
looks for intensity oscillations in bright coronal loops. These oscillations
are associated with magnetohydrodynamic waves that may be responsible for
coronal heating. We model the data in support of Russell’s measurements,
which suggested the presence of oscillations in the 1 Hz range. Our models
include a no-effect model to test noise induced by shifting in our image
sequence and a test of our sensitivity to signals non-uniform in phase and
spatial distribution. Sensitivity to oscillations down to 1% of total coronal
intensity is confirmed.
If Space Is Flat — The Topology of a Euclidean
Universe
Joey R. Shapiro
This is my senior thesis, discussing the possible shapes for a flat
universe. Recent observations suggest that the geometry of the universe may be
flat. If this is the case, then there are only eighteen distinct possible
topologies for the universe. Each of the eighteen Euclidean manifolds is
classified and discussed here. The final chapter offers the possibility of
observing the shape of the universe by analyzing the power spectrum of the
spatial distribution of gamma ray bursts from the BATSE catalogue.
Examining an Atmospheric Model: Discrepancies Observed
between Arecibo Incoherent Scatter Radar Data and the International Reference
Ionosphere
Darik O. Vélez
I present results from recent topside ionospheric research at the Arecibo
Observatory in Puerto Rico. Aeronomers at the observatory have been collecting
topside incoherent scatter data for more than a decade. We gathered and
processed large portions of this data from throughout this period and began to
make comparisons with a widely used model of the Earth’s ionosphere: the
International Reference Ionosphere (IRI). Our results highlight significant
discrepancies between our observations and the IRI predictions. Many of these
differences may be aggravated by IRI’s overestimation of the electron
density that recent studies have demonstrated, but accounting for this we still
found areas where adjustments are needed. Particular areas of estimation errors
included the light ion densities and fractions in the topside region.
PSYCHOLOGY
Positive and Negative Attributions Based on Skin Color
and Body Size Across Cultures: A Comparative Study of White North American
Children and Black Jamaican Children
Gail M. Anderson
This study investigated the way in which Black Jamaican and White North
American Kindergartners and 5th/6th Graders evaluate themselves and their peers
based on Skin Color and Body Size. Black and White experimenters tested 262
Rural and Urban Jamaican children and 150 North American children using 5
measures: A Story Task, Playmate Preference Task, Self-Identification Task,
Self-Esteem Task and a Skin Tone Assessment. Results revealed that both Jamaican
and North American children stigmatize Black skin: stigmatism decreases with age
in Urban Jamaican and North American children, but increases with age in Rural
Jamaican children. As predicted, Rural Jamaican children favor chubbiness more
than do Urban Jamaican children: stigmatism of chubbiness increases with age for
Jamaican children. While both North American age groups show Body Size
stigmatism, this decreases with age. Overweight North American, but not
Jamaican, Kindergartners had low self-esteem. Important experimenter race
effects on Jamaican children's self-identification and preference were found.
Implications of these findings are discussed.
Did I or Didn’t I?: Effects of False Memory
Implantation on Autobiographical Memories
Kathryn Dingman
There has been much recent debate over the veracity of recovered memories.
Some critics argue that it is possible to discover traumatic memories that have
been repressed for long periods of time, while others attribute recovered
memories to suggestion from outside sources such as therapy. I conducted two
experiments to study whether it is possible to implant false memories into
people’s minds through their own (apparent) testimonies. In the first
study participants gave testimony about committing various indiscretions, some
of which they actually had committed, and some of which they had not. The
results of this study demonstrated that after giving testimony, and later
watching tapes of their testimonies, a significant proportion of the
participants accepted at least one of their false-testimony stories as true. In
the second study participants gave testimony about various tasks they had
performed during a party. A few months later, these participants saw clips of
their testimonies on video, but for some of these participants these tapes were
edited so that the meaning of their testimonies was changed, and thus they were
exposed to essentially false testimonies about their behavior. The findings
from this study indicated that as a result of giving testimony and watching
manipulated video clips of their testimonies, a significant proportion of
participants came to believe that they had committed odd or embarrassing acts
that in reality they had not done. Implications for the recovered and false
memory debate are discussed.
Why Don’t They Want to Play With Me?
Children’s Appraisal of Peer Rejection and its Effects on Socio-Emotional
Adjustment
Abbey S. Eisenhower
In the current study, 95 children of different peer social status
classifications (rejected, neglected, average, and popular) were exposed to
hypothetical vignettes and a rigged social rejection experience in order to
assess their “on-line” appraisals of mild peer rejection. Five
aspects of children’s appraisal were assessed, including angry and anxious
expectations, locus of control, hostile attributions, and emotional distress.
Social and emotional adjustment was assessed through peer-, parent-, and
self-reports. Rejected girls showed more distress than any other group in
response to the rigged rejection experience. As expected, sociometric rejection
was associated with more negative adjustment outcomes across all informants.
More importantly, appraisal variables emerged as significant predictors of
adjustment above and beyond rejection, as well as significant moderators of the
relationship between rejection and adjustment. Specifically, angry and anxious
expectations of rejection resulted in a greater increase in parent-rated
internalizing and externalizing problems among rejected children, and a greater
increase in self-rated internalizing problems (e.g., social anxiety, low
perceived competence) among non-rejected children.
Stigmas and Stickers: The Effect of Self-Esteem on
Homophobia and Behavior in Association with the Gay Stigma
Karen E.
Kelly
The current research examined whether male undergraduate students would
exhibit subtle but perceptible behaviors consistent with homophobia if they were
put into a situation in which they were associated minimally with homosexuality,
and if these reactions would be moderated by manipulations of their state
self-esteem. The state self-esteem of male participants was either threatened,
affirmed, or kept neutral through a questionnaire. The participants next were
randomly assigned to wear a sticker with the word “queer” or a
neutral word “quest” for an interaction with a male confederate.
Just before the interaction, participants performed a lexical decision task,
which measured their automatic activation of stereotypic attributes associated
with homosexuals. They next interacted for several minutes with a male
confederate, who was blind to the participants‚ conditions. Participants
in the queer sticker condition sat significantly further away from the
confederate during the interaction than did participants who wore a neutral
sticker, but this difference was eliminated among participants who had been
self-affirmed. Participants who wore the queer sticker also appeared to the male
confederates to be more distressed and psychologically distant, even though the
confederates in reality were blind to condition. The implications of these
results, as well as suggestions for future research on this and related topics,
are discussed.
Do Children Gossip? Children's Stories about Their
Friends
Alice Li
The purpose of the present study was to examine the stories children
construct about their friends. We were interested in characterizing the
emergence and development of children's stories about other children's lives.
That is, when asked to tell stories about their friends, what kinds of stories
do children produce? We began looking at this phenomenon using a naturalistic
approach and later a more structured one eliciting stories from children.
Forty-three children between ages four and ten were interviewed. Potential age,
gender, and experimenter effects were investigated. The results show that
children provide three different kinds of biographical materials about their
friends: simple descriptions (discrete pieces of information not in context of
stories), scripts depicting routine events, and narratives documenting past or
present experiences. The amount of discrete pieces of information increase with
age and much of this increase can be attributed to an increase in intrapersonal
and biographical details. The number of scripts and narratives about friends
also increase with age. These stories become longer, more descriptive, include
more evaluative comments, more other-focused, and more concentrated on the
internal landscape of others. Children learned most of the stories from direct
experiences, though with age, they also increasingly tell stories that they have
heard from others. Scripts are found to be more impervious to developmental and
experimenter effects. Furthermore, girls evaluate more and focus more on the
internal landscape than boys do in their narratives. Finally, the interviewer is
found to have a profound effect on the type and number of stories elicited about
friends. Implications for such findings and directions for future research are
discussed.
Self-Presentation in Caucasian and Asian American
students
Valerie E. S. Lothian
Studies have shown that self-presentation, the manner in which an
individual portrays himself or herself in public (that is, in the presence of
another) is one dimension on which individuals with an interdependent construal
of self and individuals with an independent construal of self differ.
Individuals with an interdependent construal see the self in relation to others;
the group is the whole and the self is a member of that whole, and as a result
tends to have a more modest presentation in order to be mindful of the feelings
of the other. Individuals with an independent construal see the self as a whole,
separate from all others, and as a result tend to have a presentation which
emphasizes expressing themselves (a less modest presentation). There are also
gender differences in the self-presentation of men and women such that women
tend to be more modest than men as a result of their response to relational
cues. The present study was done to discover currently unanswered questions
regarding the presentation of Asian students, a population which may have been
exposed and socialized in interdependent cultures, and Caucasian students, a
population which may have been exposed and socialized in independent cultures,
to discover what differences exist if any. Consistent results from the data
showed among other things that Asian participants were more modest than
Caucasian participants, that women were more modest than men, that Asian women
were more modest than Asian men, and that the acculturation of Asian
participants to Asian and American culture did have an effect on both their
public and private report; the implications of which are discussed in the
study.
It’s Only a Joke: The Effects of Exposure to
Derogatory Humor
Liliana Rodriguez
This research was designed to examine how social influence factors can
affect students' attitudes about racially sensitive issues, such as attitudes or
policies that are often characterized as “politically correct” after
exposure to derogatory humor. Study 1 used a survey conducted early and late
in the academic year to assess the change of PC attitudes among white, black,
and latino/a first-year students at a small liberal arts college. Black and
white students became less likely to endorse PC attitudes over the course of the
year, however latino/a respondents became significantly more likely to endorse
PC attitudes. Study 2 examined the effects of a motivational factor-self-esteem
threat, and a social influence factor-exposure to local norms about the
acceptability of derogatory humor aimed at minorities and women, on white
participants' responses and attitudes in a group setting. Participants'
reactions to the humor conformed to the manipulation of group norms. Moreover,
participants' whose self-esteem had been threatened were particularly affected
by the manipulation of these norms on their PC attitudes, such as concerning
affirmative action. Study 3 extended Study 2 by also examining the effects of
the presence of minority students in the group setting. The presence of
minorities in a group whose norm was clearly Anti-PC appeared to facilitate
white participants, particularly those with relatively negative attitudes toward
minorities, to express disapproval of PC policies such as affirmative action. In
general, these results suggest that social influence, self-esteem threat, and
group composition are all potentially important, and interactive, factors in
affecting reactions to racially sensitive humor and policies.
Bitch: Dose the Threat of a Female Epithet Inhibit
Assertiveness and Anger Expression?
Grace E.F. Rubenstein
This study aimed to test the influence of the word and concept bitch
on women’s readiness to express themselves strongly. It was hypothesized
that the threat of being judged a bitch induces women to inhibit their
assertiveness and anger expression, and that when the salience of this threat
was enhanced women would display less such expression than under neutral
circumstances. One hundred thirty-four male and female participants completed a
scrambled sentences task in which one of the following variations on the bitch
construct was primed: (1) bitch-related trait words accompanied by female
pronouns; (2) bitch-related trait words accompanied by male pronouns; (3) the
word bitch itself; or (4) neutral words. Following this priming task, a male
experimenter issued an anger manipulation by informing each participant that she
would not receive course credit for participation. Participants’
responses were covertly videotaped and later coded for assertiveness, inhibition
of assertion, and several forms of anger expression. Contrary to the
hypothesis, the priming did not influence women’s expression.
Surprisingly, however, male participants showed significantly less assertiveness
in the female-trait, male-trait, and bitch conditions, as compared to the
neutral condition. Males also showed markedly less vocal anger expression in
the bitch condition than in any other condition.
The Relationship between Adult Personality and Childhood
Imaginary Companions
Adrienne Wiley
This investigation used standardized personality and self-report measures
of fantasy proneness and dissociation to determine which adult personality
traits were related to having an imaginary companion (IC) in childhood.
Participants were 164 college students who completed the California Personality
Inventory (CPI), the Dissociative Experiences Scale (DES), the Inventory of
Childhood Memories and Imaginings (ICMI), and a questionnaire and interview on
childhood ICs. ICs were recalled by 24 percent of the participants and were
found most frequently in only children. A logistic regression analysis revealed
that five measures were predictive of having a childhood IC: Socialization,
Communality, Self-Control, ICMI, and literary creativity. These results suggest
significant differences in adult fantasy, creativity, and several modes of
self-perception in society between those who did and did not have childhood ICs.
They were discussed in light of previous findings which are characterized by a
lack of agreement as to the extent that personality traits like sociability,
dissociation, and creativity are related to having an IC.